miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|188411713|gb|EY790926.1|EY790926 CGCTGTCCGCCAACTTTTGCGCCGTCTCTTTCTCGCTGAATCCGTGAATCTCCCTCATCATGGCGACGACTCTGCAGTTC
TGCCGTGTTTGCGCGCGAACTGACATAGGTTCGCGCCATAATAATCGCTCCGGAGCGCTGGCTCCGCCGCGCCGGAGGCC
TGTGATCGTCAGGTGCTCCGGTGAAAAATCGACGAGCTCGGCGGCGGCTATTGGTGCCGAATTTGACGCGAAACTGTTTC
GGCATAACTTGACGAGAAGTGATAATTACAATCGGAGAGGATTTGGCCACAAGGAAGAGACTTTGGAGCTCATGAATCAG
GAGTACACAAGTGATATTATAAAGAAATTGAAGGAGAATGGATTTGAGTATACTTGGGGAAATGTTAAGGTGAAGCTGGC
CGAATCATATGGCTTTTGCTGGGGAGTTGAGCGTGCTGTGCAGATTGCTTATGAAGCAAGAAAACAGTTTCCCGAGGAGA
AGATCTGGATTACCAATGAAATCATACACAATCCAACTGTTAATAAGCGGGTGGAGGAGATGGCAGTTCAAAATATACCT
GTTGAAGAAGGAAAGAACCAATTTGATGTGGTAAAATAAAGGGTGATGTTGGTGGTTTTTGCCTGCTTTTGGGGCTGCAT
TTGAAAGAAATGGTGGACTCCGAATAACCAGAATGTACAGATTTGTTAATACAACTTTGCCCCTTGGGGTGGCTTAGGGT
CTGGGACCACCTGGTTGGAAAAACCCAAGAAGGGAGAACATACCTTTTCAATTAATTCAGGGGAAAATAATTCCTCATGA
AGGAAAATTGGAACCAACCGGCATTCGCTTTTGGGGGAAAAGATAATTTCATAAATCCAAAAAAAAAATAAAAAAAAGGG
TGGAAATATATGGGGGTGGGAATTTAATTTTTTGGGGGGGGGGGAAAATTTATAGGGGGATTATAATTCACCCCCAAAAA
AATAAAAAAGGCCTTTCCTTGTTGGGGGGGAAAAAATTTCC




Most similar to sp|B0JVA7|ISPH_MICAN

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|B0JVA7|ISPH_MICAN 4-hydroxy-3-methylbut-2-enyl diphosphate
           GN=ispH PE=3 SV=1
          Length = 402

 Score =  164 bits (416), Expect = 7e-40
 Identities = 85/189 (44%), Positives = 123/189 (65%)
 Frame = +3

Query: 225 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAE 404
           D K F+  L +SDNYNR+GFGHKEE ++ M  EY SD+I++++EN +    G+V + LA+
Sbjct: 2   DTKSFKRTLQQSDNYNRKGFGHKEEVMDAMTNEYQSDLIQEIRENNYRLQRGDVTIYLAQ 61

Query: 405 SYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRVEEMAVQNIPVEEGKNQF 584
           ++GFCWGVERAV +AYE R+ FP+E+IWITNEIIHNP+VN+R+  MAV  IPVE G+  F
Sbjct: 62  AFGFCWGVERAVAMAYETRQHFPQERIWITNEIIHNPSVNQRLRSMAVGFIPVENGQKDF 121

Query: 585 DVVK*RVMLVVFACFWGCI*KKWWTPNNQNVQIC*YNFAPWGGLGSGTTWLEKPKKGEHT 764
            VV+   ++++ A  +G    +    N++   I      PW  +      +EK KK +HT
Sbjct: 122 TVVESGDVVILPA--FGASVSEMQILNDKGCMIV-DTTCPW--VSKVWNSVEKHKKSDHT 176

Query: 765 FSINSGENN 791
             I+   N+
Sbjct: 177 SIIHGKYNH 185